PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn053261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 288aa MW: 32106.9 Da PI: 6.5983

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn053261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	295.3	2.5e-90	1	287	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse.pqledsave 125 +aerd++ire+n+al e++ a+aerdma lqrd+a+aern a+ erd++l al+++e s++ s +++g ++ g+k + +qq++ pq ++ ++ Achn053261 1 MAERDSAIREKNMALDERRRAFAERDMAMLQRDAAIAERNSAVEERDKALSALQFQESSMNenhiSPDSPGNGMTCGAKPLYYHQQMHPiPQQVETGYD 99 78******************************************************99988666667889999999999888885556555454444 PP GAGA_bind 126 ...lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader..............skaekksidlvlngvslDest 207 ++ ++ +++ + ++e+ +k ++a+++k + +kk+ k+++k k+ ++ s+ + +k+ dl+ln++++Dest Achn053261 100 preIPASNPFQSTGVAYEPEKLP-----RKAKQAEQTKGSSTKKPSKSPRKGKRVSEDLSHGWKseqdlddndedldgELGLWKDDDLGLNQIHFDEST 193 11144444444444444443333.....333333333333333333322222222222221111233444567788878899************* PP GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +P+PvCsCtG ++ CYkWGnGGWqSaCCtt++SvyPLP+++++r aR++grKmS++af kl +L eG+dls+p+DLkdhW kHGtn + t++ Achn053261 194 MPAPVCSCTGLPQPCYKWGNGGWQSACCTTAMSVYPLPQMSDKRYARVGGRKMSGSAFAKLFHRLIVEGHDLSTPLDLKDHWSKHGTNCYSTVK 287 ****************************************************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.3E-92	1	287	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.0E-81	1	287	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAERDSAIRE KNMALDERRR AFAERDMAML QRDAAIAERN SAVEERDKAL SALQFQESSM 60 NENHISPDSP GNGMTCGAKP LYYHQQMHPI PQQVETGYDP REIPASNPFQ STGVAYEPEK 120 LPRKAKQAEQ TKGSSTKKPS KSPRKGKRVS EDLSHGWKSE QDLDDNDEDL DGELGLWKDD 180 DLGLNQIHFD ESTMPAPVCS CTGLPQPCYK WGNGGWQSAC CTTAMSVYPL PQMSDKRYAR 240 VGGRKMSGSA FAKLFHRLIV EGHDLSTPLD LKDHWSKHGT NCYSTVK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028117377.1	1e-158	protein BASIC PENTACYSTEINE6-like
Refseq	XP_028117378.1	1e-158	protein BASIC PENTACYSTEINE6-like
Refseq	XP_028117379.1	1e-158	protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	3e-88	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2R6RIS5	0.0	A0A2R6RIS5_ACTCH; Protein BASIC like (Fragment)
STRING	XP_009789611.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	4e-79	basic pentacysteine 6