PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn054881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 286aa MW: 31713.7 Da PI: 9.4393

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn054881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135	2.8e-42	113	212	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r +a++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+l+++ Achn054881 113 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRAEAVNSLVYEANMRLRDPVYGCMGAISALQQQVQSLQAELNLVRS 211 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn054881 212 E 212 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.756	112	213	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-42	113	210	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MGMQFKAGAQ STDDVKAPSS RNLPWFNYLV IIVFCINRMI QGLALIDKVS SHGAIIWFMS 60 YSSPIYFGYL KFLRNMERFD EIGKKIKRDS DASIQMGRRY MVGSPRTLNI ITPCAACKLL 120 RRRCAQECPF SPYFSPHEPQ KFASVHKVFG ASNVSKMLME VPESQRAEAV NSLVYEANMR 180 LRDPVYGCMG AISALQQQVQ SLQAELNLVR SEILKFKYRE SDIIPSSHIS LFSSGIVSIA 240 APPAAPPPPP PPPLPPTLSS SLYSPLSTAT DYSTKANDQN VPYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	104	227	2	125	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	104	227	2	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	1e-107	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6RR32	1e-124	A0A2R6RR32_ACTCH; LOB domain-containing protein
STRING	cassava4.1_031813m	1e-105	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-76	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]