PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn055041

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 172aa MW: 18820.6 Da PI: 8.1249

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn055041	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.9	1.1e-40	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++ C +apyf +++pkkfa vhk+FGasnv+k+l+++ ee+r+da++slvyeAear+rdPvyG++g i lq+++ +l+++l+++++ Achn055041 13 SCAACKFLKRRCSPTCLFAPYFRSDEPKKFAQVHKVFGASNVSKILAEVAEEHRHDAVNSLVYEAEARLRDPVYGCIGAIAILQRKMVELQQDLDVARK 111 6*********************************************************************************************99987 PP DUF260 100 e 100 + Achn055041 112 R 112 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.925	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-40	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MVKGGHEPRS SGSCAACKFL KRRCSPTCLF APYFRSDEPK KFAQVHKVFG ASNVSKILAE 60 VAEEHRHDAV NSLVYEAEAR LRDPVYGCIG AIAILQRKMV ELQQDLDVAR KRLARCAAGV 120 SPLSLLQDDQ FLVNSLSEFL PLVPGYSGWG EGFNQSGSSS MDELSQLLFP K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	8	119	6	117	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	8	119	6	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272821.1	4e-68	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	7e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2R6RR71	1e-123	A0A2R6RR71_ACTCH; LOB domain-containing protein
STRING	VIT_13s0067g01450.t01	1e-67	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-61	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]