PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn055051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 253aa    MW: 27161.1 Da    PI: 6.5051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn055051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17352255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Achn055051  3 KYRGVRQRS-WGKWVAEIREPRK---RRRRWLGTFSTAEDAAAAYDRAAVILYG 52
                7*****999.**********954...5*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-10347IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21361IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-29360IPR001471AP2/ERF domain
CDDcd000183.82E-13362No hitNo description
SMARTSM003801.0E-35366IPR001471AP2/ERF domain
PROSITE profilePS5103222.023360IPR001471AP2/ERF domain
PRINTSPR003678.3E-10415IPR001471AP2/ERF domain
PRINTSPR003678.3E-102642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFKYRGVRQR SWGKWVAEIR EPRKRRRRWL GTFSTAEDAA AAYDRAAVIL YGQRAQLNLQ  60
PSPAPISSGG GGGSSSARGG GSSSSSTQTL RPLLPRPPNF SVTFPPYSST LPSPYSNIYD  120
TVQFSTAVQS PCQLSQIVPS CTNHVHSDAI AASAATTMDA SSPLLSSYPI PYYDPQSHHP  180
NYLYEQINSL VGSVDSSLCL SSHHVVEPAV SDPTVAAVET SAVGSPVIWP VTSDDDYPPA  240
SIWDYGDPSF DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18469669ATERF1
3gcc_A5e-18469669ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821683.18e-56PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A2R6RR870.0A0A2R6RR87_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_13s0067g01400.t012e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.17e-16ERF family protein