PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn055521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 214aa    MW: 23531 Da    PI: 9.2697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn055521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-123985354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                + h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +ve +k+L
  Achn055521 39 KRHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVVEQVKDL 85
                569************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.55E-103488No hitNo description
SuperFamilySSF474591.11E-123489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.6843685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-103985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-144088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-104291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.83E-6118191No hitNo description
Gene3DG3DSA:3.30.70.2602.2E-7120166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSVKSNESM ATTFQIHGGY DSSWSMPFGG NKEDGSASKR HSQAEKRRRD RINAQLATLR  60
KLIPKSDKMD KAALLGSVVE QVKDLKRKAM EVTKFITVPT EVDEVTIDSY LDQDGEDFIR  120
ASLCCDDRPE LLAELTQALH GLKLTITRAD MACLGGRIKG ILVLCNRDGE EGVGLNHIKQ  180
SLKGVLGRIA LSSSGVSYSM KSKRQRFFTP CHV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091628.13e-86transcription factor bHLH51-like
TrEMBLA0A2R6RR801e-151A0A2R6RR80_ACTCH; Transcription factor bHLH51 like
STRINGXP_009345143.12e-80(Pyrus x bretschneideri)
STRINGXP_008374114.12e-80(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-43bHLH family protein