PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn056701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 189aa    MW: 21293.3 Da    PI: 7.7988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn056701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.2e-06423120
                CHHHHHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsaf 20
                +r++h ++Er+RR+++N+ +
  Achn056701  4 QRMTHIAVERNRRKQMNEYL 23
                79***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.75E-6246No hitNo description
Gene3DG3DSA:4.10.280.106.5E-4223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-10257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MENQRMTHIA VERNRRKQMN EYLSGDQASI IGGAINYVKE LEQKLHFLGG NKHVNNQKFE  60
AGSSTSSSSL PFDDYFTFPQ YTTSRDNSIM VSENHELAMA DIEVTMVESH ANLKIRSKRR  120
PKQLLKMVSG LQSLRLTILH LNVTTVHQIV LYSLSLKVED DCKLSSVDEI ATAVNQMLGR  180
IQQEAVLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059913.17e-96transcription factor bHLH94-like
SwissprotQ9C7T43e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6RBK71e-117A0A2R6RBK7_ACTCH; Transcription factor bHLH94 like (Fragment)
STRINGVIT_14s0128g00110.t012e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]