PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn057881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 331aa    MW: 36298.3 Da    PI: 7.1698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn057881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092127149123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C++ Fs+   L  H  +H
  Achn057881 127 YQCKTCDRAFSSFQALGGHRVSH 149
                 9**********999988887766 PP
2zf-C2H211.90.00068193215123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cg  Fs+   L  H+r+H
  Achn057881 193 HECLICGVEFSSGQALGGHMRRH 215
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-9126149IPR007087Zinc finger, C2H2
SuperFamilySSF576678.75E-8126149No hitNo description
PROSITE profilePS5015711.635127154IPR007087Zinc finger, C2H2
SMARTSM003550.12127149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4127151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576678.75E-8188215No hitNo description
PfamPF139124.2E-11192217IPR007087Zinc finger, C2H2
SMARTSM003550.082193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEAIDGEFM GDGPKDHAQV IIKRKRTQRQ RSLSPIPISI VPFATLSSSG DGDNNINAAT  60
TSSTSAESVV TDEEEDVANC LFLLSQGPPK FDVDDHEKNV TKFTSKRYLE TPWMGGSGGG  120
KAGRYVYQCK TCDRAFSSFQ ALGGHRVSHT RPKSDRDTGH YNDHEEQMRR QYMPPSLSLQ  180
GNNNNPKASS KVHECLICGV EFSSGQALGG HMRRHRASIG ANTSFSSSPS PSPIGYEFVD  240
PEAKKARIVL PLDLGLDLNL PAPEDRVRLN QSKVGFTPKQ QEQQQQQQQS PIGLGFTLKQ  300
QEQQSQHQHQ HQQSPIGTLS VAPALGDCHY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068862.14e-65zinc finger protein ZAT5
TrEMBLA0A2R6PYR40.0A0A2R6PYR4_ACTCH; Zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-40C2H2 family protein