PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn057971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 302aa    MW: 33483.4 Da    PI: 6.4124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn057971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-182876355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Achn057971 28 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAAVAYDRAARSMKG 76
                67******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-332790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-292784IPR001471AP2/ERF domain
CDDcd000181.46E-292783No hitNo description
PROSITE profilePS5103220.4812784IPR001471AP2/ERF domain
PRINTSPR003675.5E-82839IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-202885IPR016177DNA-binding domain
PfamPF008471.6E-103076IPR001471AP2/ERF domain
PRINTSPR003675.5E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNLSTNSSKS KNKQTQQQEE KAGRSNRFLG VRRRPWGRYA AEIRDPSTKE RHWLGTFDTA  60
EEAAVAYDRA ARSMKGSRAR TNFVYSDMPP GSSVTSIISP DDHHHPPPSH HDHPNPNHYF  120
SSASLHFHHV PPHRPPPLSQ PGDTISSHEL FVSHNTTRTT STEFPCHFYP DGFSGNTWAT  180
SSVIENGGCR QFYNDGSDLL PLPPQVSCWE DIGDLDYAGR TSTRGDGGVW TDTPTLHENQ  240
NTTFITTPTV QFGPDESGSY PGFDSTKYLH SPLFGQMPPV SDSDIAFEHL DLGGSSTTFF  300
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-192883359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-192383162ATERF1
3gcc_A3e-192383162ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RPA80.0A0A2R6RPA8_ACTCH; Ethylene-responsive transcription factor LEP like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-33ERF family protein