PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn058181

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 253aa MW: 28543.4 Da PI: 4.9178

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn058181	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.1	8.5e-12	11	49	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s r+ t+ kRr+ ++KK eELSvL d++ i++s Achn058181 11 IANESSRKATLKKRRASMFKKIEELSVLSDVRTGAIVYS 49 89*******************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.25	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-12	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-18	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.36E-21	2	84	No hit	No description
PRINTS	PR00404	1.3E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-12	11	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-6	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MTRNKINLAL IANESSRKAT LKKRRASMFK KIEELSVLSD VRTGAIVYSL GEANPAVFPS 60 YEAVKPMFEK FLSTSIVERT QKMVTHESYL SQRVTKETEK KITEKKKNDR IEAQEIMNKT 120 FEGNGLNDLD IVILNNLTLL TVDKLKELEE REQAPREQVI PPPPPPATDN GTLEVKEEEA 180 FIQARSRDEF VSSSVSTSIQ QLMDDHWFME TMALHQELLG PSEISDIGYP PEYAASTSTS 240 ENEEKLPKDL HA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028119488.1	1e-78	agamous-like MADS-box protein AGL80
TrEMBL	A0A2R6QVS5	1e-164	A0A2R6QVS5_ACTCH; MADS-box transcription factor PHERES like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	4e-23	M-type_MADS family protein