PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn058441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 198aa    MW: 21275.6 Da    PI: 8.6824
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn058441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.35.4e-1929125197
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                 +C aCk+lrrkC+ +Cv+ap+f ++q +++fa+vhk+FGasnv+kll ++p    ++ + ++v    +  r  v +a++  ++ qqq ++ ++++a+l
  Achn058441  29 PCGACKFLRRKCVGGCVFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVASLQAEL-AMVQTQLINSRLAVANAFQNTKQQQQQQQHQQQQIAVL 125
                 7***********************9989*********************9877644333.23333344445556666666666666666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.50828133IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-2029126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADPHTSDGR RKPSVKRATS AADATAAPPC GACKFLRRKC VGGCVFAPHF GSDQGAARFA  60
AVHKVFGASN VSKLLLHIPV ASLQAELAMV QTQLINSRLA VANAFQNTKQ QQQQQQHQQQ  120
QIAVLQPAYS NNSSTSNNQL INTTTFNPSF DLTAETAPSS HSFEPPQLSR RPSQDGEEGE  180
EESRDPVAFA NHSLHSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-162679860LOB family transfactor Ramosa2.1
5ly0_B2e-162679860LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271115.12e-68PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-40LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A438DI503e-67A0A438DI50_VITVI; LOB domain-containing protein 20
STRINGVIT_08s0056g01650.t017e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-37LOB domain-containing protein 20