PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn058751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 838aa MW: 95789.9 Da PI: 6.6485

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn058751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.9	2.5e-16	66	139	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY+eYA++vGFs+++++ ++s+ +++ r+f C +eg ++++ ++ C+a+l++++++ gkw v+k++++H+H+ Achn058751 66 FYDEYARRVGFSTCVNQFNRSEPGDKTNAREFLCAREGLKRKNCER--------------CNAMLRIERKDPGKWIVSKFVKDHSHST 139 9************************************9998766..............************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-13	66	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.7E-31	262	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.991	538	574	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-10	540	572	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-9	549	576	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MDVEAIDLEN VDNYMEVDEG DLEINEHAVV GSDNSTENFL STQDEVGIDE PHIGMEFESE 60 DAAKTFYDEY ARRVGFSTCV NQFNRSEPGD KTNAREFLCA REGLKRKNCE RCNAMLRIER 120 KDPGKWIVSK FVKDHSHSTV TPSKVHYLRP RRLFSGANKG MDESYSEDRT LSPVMMHVSV 180 DGNHVSGERN RGNPRAKTLV RSGHIKGTIG DAQNLLDYFK NMQGEHPGFY YAVQLDKSNH 240 MTNVFWADAR SRTAYRNFGD AVTFDTTYRT NNCKVPHASF TGVNHHGRMV LFGCGLVVDE 300 SESSFTWLFR TWLSAMNDRP PLSITTDQDK VIKSAVSKVF PNTRHRICKW HVLGEGQRRL 360 DRLRKNHPAF NGDLYNCINM TETIEEFESS WNSLIDKYHQ QKNDWLQALY STREHWVPVY 420 FRDSFFASIS SDQGMSFFDG YVDEQTTLPL FFRQYERALE QSFQEEIEAD FDTIRTMPLL 480 KTPSPMEKQA ANIYTRRIFM KFQEELVETF AYTANKEYGD GSFSRYRVAK FEDQQKTYIV 540 SLNILELRAT CSCQMFEYSG ILCRHILTVF TVTNVFTLPS HYIKKRWTRH AKSGAGLDDR 600 GVEVEGSESL ALRYNSLCRE AMKYAEEGAI AVEMYCVAMN AIREGRKKVA VAMKDAAKVT 660 PKPQVYGGQE DGNKEIDVSK AEMTPLLWPH VQAKHQPAFN DSDMNRKPWR SYQDEATHPL 720 NRNNIVACTP TPQKDLPCMA PLSLQRDDGT SNNTVILPYL RSMTWFMENK SLRPAKRVAV 780 INFKLQDYGN DTSGETEVKF QLSKVTLEPM LSSMASIGEQ LATAANQVAV INLKMPE*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MDVEAIDLEN VDNYMEVDEG DLEINEHAVV GSDNSTENFL STQDEVGIDE PHIGMEFESE  60
DAAKTFYDEY ARRVGFSTCV NQFNRSEPGD KTNAREFLCA REGLKRKNCE RCNAMLRIER  120
KDPGKWIVSK FVKDHSHSTV TPSKVHYLRP RRLFSGANKG MDESYSEDRT LSPVMMHVSV  180
DGNHVSGERN RGNPRAKTLV RSGHIKGTIG DAQNLLDYFK NMQGEHPGFY YAVQLDKSNH  240
MTNVFWADAR SRTAYRNFGD AVTFDTTYRT NNCKVPHASF TGVNHHGRMV LFGCGLVVDE  300
SESSFTWLFR TWLSAMNDRP PLSITTDQDK VIKSAVSKVF PNTRHRICKW HVLGEGQRRL  360
DRLRKNHPAF NGDLYNCINM TETIEEFESS WNSLIDKYHQ QKNDWLQALY STREHWVPVY  420
FRDSFFASIS SDQGMSFFDG YVDEQTTLPL FFRQYERALE QSFQEEIEAD FDTIRTMPLL  480
KTPSPMEKQA ANIYTRRIFM KFQEELVETF AYTANKEYGD GSFSRYRVAK FEDQQKTYIV  540
SLNILELRAT CSCQMFEYSG ILCRHILTVF TVTNVFTLPS HYIKKRWTRH AKSGAGLDDR  600
GVEVEGSESL ALRYNSLCRE AMKYAEEGAI AVEMYCVAMN AIREGRKKVA VAMKDAAKVT  660
PKPQVYGGQE DGNKEIDVSK AEMTPLLWPH VQAKHQPAFN DSDMNRKPWR SYQDEATHPL  720
NRNNIVACTP TPQKDLPCMA PLSLQRDDGT SNNTVILPYL RSMTWFMENK SLRPAKRVAV  780
INFKLQDYGN DTSGETEVKF QLSKVTLEPM LSSMASIGEQ LATAANQVAV INLKMPE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028096884.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_028096885.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2R6QVJ5	0.0	A0A2R6QVJ5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_08s0040g00200.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]