PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn059241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 143aa    MW: 16016.8 Da    PI: 7.7909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn059241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-052749123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F ++  L  H++ H
  Achn059241 27 FECQYCNKGFANSQALGGHQNAH 49
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-72454No hitNo description
Gene3DG3DSA:3.30.160.609.6E-62453IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.2E-62651IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2372754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKLFGFPVTA CDESLVTEPQ DGDSKRFECQ YCNKGFANSQ ALGGHQNAHK KERQRAKLAH  60
FDSHHHQRFR IAVPVHNPHI VRSRPLIHSN GGVRPPQVPP RSPHWVHVGG SHQRALVGQD  120
DDDDMGPSRS MRDDEVDVDL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066522.19e-55zinc finger protein 6-like
TrEMBLA0A2R6PW271e-100A0A2R6PW27_ACTCH; Zinc finger protein
STRINGVIT_05s0077g01390.t012e-33(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.19e-13C2H2 family protein