PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn059561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 316aa MW: 35678.8 Da PI: 6.7178

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn059561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	156	214	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers++d ++v++tYeg+H+h+ Achn059561 156 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTPSCGVKKRVERSSDDRSIVVTTYEGTHTHP 214 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-34	142	216	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-29	148	216	IPR003657	WRKY domain
PROSITE profile	PS50811	31.192	151	216	IPR003657	WRKY domain
SMART	SM00774	9.6E-39	156	215	IPR003657	WRKY domain
Pfam	PF03106	4.4E-27	157	214	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEKIEETKAE NSMVNSTISD QNWTGLGLQG ILDMPCEGGT INQKASLGFN MDMFGIQDYC 60 DPSLFDLLRT PVMPPHPVVS ESPEIINTPA TPNSLSVSSS STEANDEQQT KTTAEEQEQE 120 QEQEKAKKLL KPKKKNPKRA TEPRFAFMTR SEVDHLDDGY RWRKYGQKAV KNSPFPRSYY 180 RCTTPSCGVK KRVERSSDDR SIVVTTYEGT HTHPCPVTPR GNIAIMPESL GFSGNISTSS 240 FVHPQPPYQQ FQQQHHQQPY FHNPTPSLRF STTNSSFPTF QERQFRPSSS SLLRDNGLLQ 300 DMIVPSQERK EPKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	149	216	10	77	Probable WRKY transcription factor 4
2lex_A	1e-27	149	216	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028115186.1	1e-116	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	3e-51	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2R6PVT0	0.0	A0A2R6PVT0_ACTCH; WRKY transcription factor
STRING	VIT_05s0077g00730.t01	1e-101	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	7e-47	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]