PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn060061

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 206aa MW: 22604.8 Da PI: 5.1964

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn060061	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.2e-42	44	144	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la++++ Achn060061 44 PCAACKILRRRCAEKCVLAPYFPPTDPIKFTTAHRVFGASNIIKFLQELPESRRADAVSSMVYEANARLRDPVYGSAGSIFQLQNQVNELQAQLAKAQA 142 7************************************************************************************************99 PP DUF260 100 el 101 +l Achn060061 143 QL 144 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.747	43	144	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-41	44	141	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MYKCDQLIYK SELLGDISDI SLSPQSLSPN SSTSPPPSQV VLSPCAACKI LRRRCAEKCV 60 LAPYFPPTDP IKFTTAHRVF GASNIIKFLQ ELPESRRADA VSSMVYEANA RLRDPVYGSA 120 GSIFQLQNQV NELQAQLAKA QAQLVTMQSQ QANLVAFICM EMAQSPPPPP PSPLSINLDN 180 FNMNSPYNLF PDETNPGSLW DPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	43	145	10	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	43	145	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244970.1	7e-84	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-69	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2R6P7I8	1e-132	A0A2R6P7I8_ACTCH; LOB domain-containing protein
STRING	XP_010244970.1	3e-83	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-59	LOB domain-containing protein 1