PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn060371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 566aa    MW: 63205.2 Da    PI: 7.5577
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn060371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.8e-20581381799
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +l +  a +++ + e++ t++++d +g  W++++i+r++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+v+++r+
  Achn060371  58 ILCRVAAVRFMADAETDETVIVKDVHGDIWKFRHIFRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 138
                 555556666666777888*************************************************..4488999****997 PP
2Auxin_resp107.91.1e-35179261183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a++ ++FevvY+Prast+eF++k+++v+++++++++ GmRfkm fet+ds+   ++Gtv++v+ +dp++WpnS+Wr L+
  Achn060371 179 AASLAANWQPFEVVYYPRASTPEFCIKASSVRASMRIQWCSGMRFKMPFETDDSRISWFMGTVASVQVADPIHWPNSPWRILQ 261
                 6788999**********************************************998888**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2339141IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-1242139IPR003340B3 DNA binding domain
PfamPF023621.3E-1757138IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1857139IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-1474137No hitNo description
PROSITE profilePS5086311.80176139IPR003340B3 DNA binding domain
PfamPF065073.6E-30179261IPR010525Auxin response factor
PROSITE profilePS5174518.043460538IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MREVEKSLDS QLWHACAGGM VQLPPVNSKV FYFPQGHAEH ALTTTVDFED LRRIPALILC  60
RVAAVRFMAD AETDETVIVK DVHGDIWKFR HIFRGTPRRH LLTTGWSTFV NQKKLVAGDS  120
IVFLRAENGD LCVGIRRAKR GIAGDENKLM RNGSSGNLNS GDGGLRGKGR VRPEDVVEAA  180
SLAANWQPFE VVYYPRASTP EFCIKASSVR ASMRIQWCSG MRFKMPFETD DSRISWFMGT  240
VASVQVADPI HWPNSPWRIL QMAWDEPDLL QNVKRVSPWL VELVSNMPTI HISPFSPPRK  300
KLRLPQHLDF PLDGQFSMPS FSGNPLGPLS PLRCLSDNIP AGIQGARHAQ YGIPLSDLHF  360
NDKLQLGLFR NENISCLLTM GNSNSKLEML LEKTDNVKKP QFILFGQPIL TEQQISCSRS  420
SVAVSQVLTG KSSPDGIPEK AEKSAFDHQG FHMTELGLDT GHCKVFMESE DVGRNLDLSV  480
IESYEELYKE LTNMFGIERS ETPCRVLYKD ATGAIKQTGD EPFSDFMKTA KRLTIVLDSV  540
GNNFGRKWMT GMRNAENGLD SSNQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-4367282189388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070574.10.0auxin response factor 18
RefseqXP_028070575.10.0auxin response factor 18
RefseqXP_028070576.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2R6PEZ50.0A0A2R6PEZ5_ACTCH; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-176auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]