PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn060771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 258aa    MW: 27461.5 Da    PI: 4.4275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn060771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-134891654
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  +Er RR+++N++++ Lr+++P+ +      K++Ka+i + A++YI++L
  Achn060771 48 IVAERDRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 91
                578*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.8254291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1742106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.18E-144596No hitNo description
Gene3DG3DSA:4.10.280.103.7E-1748106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-154897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-114891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
HamapMF_0147811.522135257IPR027534Ribosomal protein L12 family
PfamPF004285.1E-12207256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006414Biological Processtranslational elongation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENDLVSKSQ LKPNLEISNS WGLDEALSGY YDSSSPDGAQ SSAASKNIVA ERDRRKKLNE  60
RLFALRSVVP NISKMDKASI IKDAIDYIQE LHDQERRIQA EILELESGKI CDSEEEIPAL  120
LRSKKKKIDQ TFDSGEMGVF TFVCRSSGGD WSAKQLSGEL EAAATSTYEL QRKLVQVALS  180
ADSSGGVHTS FSLITPSSAV FQVIIGGGSG GAFIGSGASA AAAPAVAASA AEAPPAEEKK  240
AEKEESEDED MGFSLFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1447107969Transcription factor MYC2
5gnj_B3e-1447107969Transcription factor MYC2
5gnj_E3e-1447107969Transcription factor MYC2
5gnj_F3e-1447107969Transcription factor MYC2
5gnj_G3e-1447107969Transcription factor MYC2
5gnj_I3e-1447107969Transcription factor MYC2
5gnj_M3e-1447107969Transcription factor MYC2
5gnj_N3e-1447107969Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-41bHLH family protein