PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn061011

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 378aa MW: 42129.6 Da PI: 7.5973

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn061011	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.9e-07	151	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G C Gd C FaHg Achn061011 151 SVCPEFRK-GNCEKGDACEFAHG 172 68****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	7.4E-6	147	174	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.422	147	174	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-5	147	173	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-5	151	172	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	179	209	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.869	182	206	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1	182	205	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MVSTRIPQQF INQPCPVCFM VVTSSDATTK MMMMIGERNH PNPTIHVPPW TLLDDPTVDT 60 SFPFAVTPVS VNLNGNADEY TPFDSHRYLP SNDVDSDPDD SGQDSDHFRM FEFKIRKCTR 120 GRSHDWTECP YAHPGEKARR RDPRRYRYSG SVCPEFRKGN CEKGDACEFA HGVFECWLHP 180 TRYRTQPCKD GLACRRRVCF FAHSPDELRV LGSDPGPGSY DGSPQRMKGL ALELVSSPES 240 PRMSNSNSPS RSLGSNSVNE LMACMRELQL NKVKSMPSSW GFQMGGSGLG SPRLPVTRPG 300 FCSLPATPTR VTTRKGIGSF DLWDQGGCVE EPVMERVESG RDLRAKMFEI LSRENPLDRA 360 NPGLKILGLE PGGSNIW*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MVSTRIPQQF INQPCPVCFM VVTSSDATTK MMMMIGERNH PNPTIHVPPW TLLDDPTVDT  60
SFPFAVTPVS VNLNGNADEY TPFDSHRYLP SNDVDSDPDD SGQDSDHFRM FEFKIRKCTR  120
GRSHDWTECP YAHPGEKARR RDPRRYRYSG SVCPEFRKGN CEKGDACEFA HGVFECWLHP  180
TRYRTQPCKD GLACRRRVCF FAHSPDELRV LGSDPGPGSY DGSPQRMKGL ALELVSSPES  240
PRMSNSNSPS RSLGSNSVNE LMACMRELQL NKVKSMPSSW GFQMGGSGLG SPRLPVTRPG  300
FCSLPATPTR VTTRKGIGSF DLWDQGGCVE EPVMERVESG RDLRAKMFEI LSRENPLDRA  360
NPGLKILGLE PGGSNIW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058693.1	1e-173	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-105	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2R6R469	0.0	A0A2R6R469_ACTCH; Zinc finger CCCH domain-containing protein
STRING	XP_010244375.1	1e-139	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	2e-82	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]