PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn062881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 273aa    MW: 29645.2 Da    PI: 8.4649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn062881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.4e-29107167259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp+++++tY+g+H+++
  Achn062881 107 DDGYTWRKYGQKEILGSRFPRGYYRCTHQkqyHCPAKKQVQRLNNDPTTFQVTYNGDHTCH 167
                 8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-28102167IPR003657WRKY domain
SuperFamilySSF1182901.31E-25103168IPR003657WRKY domain
SMARTSM007741.4E-35106168IPR003657WRKY domain
PfamPF031067.6E-26107167IPR003657WRKY domain
PROSITE profilePS5081122.32107169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MARDRLSAHE SQVAEHGGGV VQEWLRSTQA MSLLHTQFSG VHVMGGRDTV GGLMQFSGGG  60
VEVPPVDVAD SGGISSSQRS RRRKDDLGKR TVMVPAPRMG NTEIPPDDGY TWRKYGQKEI  120
LGSRFPRGYY RCTHQKQYHC PAKKQVQRLN NDPTTFQVTY NGDHTCHLSS FAPSALTISA  180
QLSPPSITYS PPMPPVSAAL GRWLSMDIQP MSGGGSAGAG PSTVRFGREV DYQWPVTDLA  240
DAMFNSGSSS NNSMELIFSS MEEKSETGER KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21107166968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083209.18e-80WRKY transcription factor 55
TrEMBLA0A2R6PMG81e-136A0A2R6PMG8_ACTCH; WRKY transcription factor
STRINGXP_002520832.15e-76(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-46WRKY DNA-binding protein 55