PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn063431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 240aa    MW: 24666 Da    PI: 4.6251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn063431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05125147123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp Cg+  +++++L  H+++H
  Achn063431 125 FQCPVCGRFLPSNHSLSGHMKSH 147
                 89********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-5121150No hitNo description
SMARTSM003550.0029125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118125154IPR007087Zinc finger, C2H2
PROSITE patternPS000280127149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MTNPNDSPNQ SPTHKTPKPR VAGEGPSDST PPPRAAGASP SPQPLRDFRP HTTAAVGGGE  60
TAVGESSTGG GGGETVAVSE GLALLAIGGC GDCVEAASGE GGSGAVHRKR TRDGGVPPPV  120
EGQQFQCPVC GRFLPSNHSL SGHMKSHPHR GWRGIHPPPV FNRAEFGDIL GQAEEEVAMA  180
ASVKEGETVG DKEEEEEVVV AVEEGREEVA AEKGGDGTDL NEEPPRKLLD LNRTPSPEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109676.12e-17glycine-rich cell wall structural protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-08C2H2 family protein