PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn063461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 140aa    MW: 16128.2 Da    PI: 11.5833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn063461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-0978130146
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqk 46 
                      + +WT  E+e+l+++vk++ +     Wk+I +       kgRt  ++k++w++
       Achn063461  78 KVPWTSVEEEILKEGVKRFSSVldrKWKRILEFGSevfqKGRTTIDLKDKWRN 130
                      579****************987999*****998889999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.4173132IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-1174135IPR009057Homeodomain-like
SuperFamilySSF466893.14E-1075133IPR009057Homeodomain-like
SMARTSM007170.003177134IPR001005SANT/Myb domain
CDDcd116604.26E-1379133No hitNo description
PfamPF139212.5E-581137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MLQLLLAVAF SAVPLTLYIP PIRILSLFVE SLEHLFRHAS ASSLRVLPRL RLLFSRLLST  60
LLRAQSTYPA IPQLRRKKVP WTSVEEEILK EGVKRFSSVL DRKWKRILEF GSEVFQKGRT  120
TIDLKDKWRN ICRGSPKSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114829.11e-35uncharacterized protein LOC114312751
RefseqXP_028114830.11e-35uncharacterized protein LOC114312751
RefseqXP_028114831.11e-35uncharacterized protein LOC114312751
RefseqXP_028114832.11e-35uncharacterized protein LOC114312751
RefseqXP_028123395.12e-36uncharacterized protein LOC114320526
TrEMBLA0A2R6R5792e-44A0A2R6R579_ACTCH; Myb-like protein
STRINGXP_006493906.17e-32(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-09MYB_related family protein