PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn063681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28601.2 Da    PI: 7.7533
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn063681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19103157256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keql  Lee F+++++++ +e++ LAk+l+L  rqV vWFqNrRa+ k
  Achn063681 103 RKKLRLSKEQLAFLEENFKEHSTLNLKEKQALAKQLNLHPRQVEVWFQNRRARTK 157
                 678899***********************************************98 PP
2HD-ZIP_I/II118.83e-38103193192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEe+F+e+++L+ ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een rL+ke +eLr +lk
   Achn063681 103 RKKLRLSKEQLAFLEENFKEHSTLNLKEKQALAKQLNLHPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENWRLQKELQELR-ALK 193
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-18100160IPR009057Homeodomain-like
SMARTSM003893.3E-15101163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-18103157IPR009057Homeodomain-like
PfamPF000466.4E-17103157IPR001356Homeobox domain
CDDcd000866.21E-15103160No hitNo description
PROSITE profilePS5007117.022103159IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
SMARTSM003406.7E-24159202IPR003106Leucine zipper, homeobox-associated
PfamPF021835.0E-10159193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFFKFSSKAV DQWPETTNVL SEPAAPPDAN LQEREDGPAL SSSPNSTVSS IFPMDLSLYT  60
SHQGRGNKRD FETRLREMER DERGVSNSSR ASDHDEEENC LVRKKLRLSK EQLAFLEENF  120
KEHSTLNLKE KQALAKQLNL HPRQVEVWFQ NRRARTKLKQ TEVDCEYLKK CCETLTEENW  180
RLQKELQELR ALKTSQPFYK QLPATTLTMC PSCEWRVASA AASAINITAS AATITAATDN  240
TTLCLSKPRS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629441e-66AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176856.19e-87homeobox-leucine zipper protein HOX11
SwissprotP466656e-75HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2R6R5541e-167A0A2R6R554_ACTCH; Homeobox-leucine zipper protein
STRINGXP_010265939.12e-82(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-74homeobox from Arabidopsis thaliana