PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn064651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 252aa    MW: 28752 Da    PI: 4.5661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn064651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-2963121259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+ +Hnh+
  Achn064651  63 SDCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRSDASMLIITYTYTHNHD 121
                 699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-3156123IPR003657WRKY domain
SuperFamilySSF1182901.28E-2560123IPR003657WRKY domain
SMARTSM007741.8E-3462122IPR003657WRKY domain
PROSITE profilePS5081131.0263123IPR003657WRKY domain
PfamPF031063.1E-2464121IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDCLVDTRGP TLRPANQNVG QAGFSIEKYL DVHLDMKVVE KTVVRVKMSE ANEGKQRSDG  60
PPSDCWSWRK YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERCRSDASML IITYTYTHNH  120
DLPNTKPSKE EPQIKPTTTP KQEDEDEEEE TEENQKSEED QFHYSQSPFN NSEDIIVINQ  180
QYPFAEENVL VDEEPLCCYH PPPPPLMALS ALKSEENDHF YDELEELVLP SSSSSFLMTD  240
FFGERILIRP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18631241780Disease resistance protein RRS1
5w3x_D2e-18631241780Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9271603e-52JF927160.1 Panax quinquefolius WRKY4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611426.13e-70probable WRKY transcription factor 35
TrEMBLA0A2R6QD451e-157A0A2R6QD45_ACTCH; WRKY transcription factor
STRINGVIT_07s0005g01520.t012e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-36WRKY DNA-binding protein 65