PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn065561

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ERF

Protein Properties

Length: 187aa MW: 21053 Da PI: 8.6318

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn065561	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.2e-19	6	56	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f+tae Aaka+++a+ ++g Achn065561 6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRIWLGTFDTAEAAAKAYDEAAIVMNG 56 59***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.15E-20	6	63	No hit	No description
PROSITE profile	PS51032	21.443	7	64	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.6E-31	7	64	IPR001471	AP2/ERF domain
Pfam	PF00847	9.4E-12	7	56	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-36	7	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-20	7	65	IPR016177	DNA-binding domain
PRINTS	PR00367	3.9E-10	8	19	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.9E-10	30	46	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVVQSKKFRG VRQRQWGSWV SEIRHPLLKR RIWLGTFDTA EAAAKAYDEA AIVMNGQNAK 60 TNFSVPTTPD TDKDIFTKDT PTMADILTAK LQKCCKYPSP SLTCLRLDTE NSRLGVWQKR 120 AGPRSDSNWV TRVQLGKREK MNYRPSESSS ATCPVEMGEE IEEENRLAMQ MIEELLNGNS 180 GELVPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-15	3	63	10	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027332787.1	2e-76	ethylene-responsive transcription factor WIN1-like isoform X2
Swissprot	Q3E958	9e-67	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A2R6QMK3	1e-109	A0A2R6QMK3_ACTCH; Ethylene-responsive transcription factor
STRING	XP_006427266.1	1e-74	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1352	24	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	3e-60	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]