PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn066231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 153aa    MW: 16711.8 Da    PI: 7.2585
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn066231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.51.4e-5625119195
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                 vreqdrflPian+srimkk+lP+n+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre ++
  Achn066231  25 VREQDRFLPIANISRIMKKALPTNGKIAKDAKETLQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRYREGDT 119
                 69*****************************************************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-5320127IPR009072Histone-fold
SuperFamilySSF471134.04E-3928123IPR009072Histone-fold
PfamPF008082.7E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.9E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.9E-217896No hitNo description
PRINTSPR006158.9E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MADGDPLSPG GGSHESGDQS PRSGVREQDR FLPIANISRI MKKALPTNGK IAKDAKETLQ  60
ECVSEFISFV TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKVY LTRYREGDTK  120
GTAKGGEGSA RKDVQYGPNV QNLEMGRLKI LT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4825116192Transcription factor HapC (Eurofung)
4g92_B7e-4825116192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969981.12e-88nuclear transcription factor Y subunit B-10
RefseqXP_015969982.12e-88nuclear transcription factor Y subunit B-10
RefseqXP_025605060.12e-88nuclear transcription factor Y subunit B-10
SwissprotQ8VYK46e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2R6R8581e-100A0A2R6R858_ACTCH; Nuclear transcription factor Y subunit B-8 like
STRINGGLYMA19G36220.21e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-77nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]