PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn066811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 655aa    MW: 71662.4 Da    PI: 9.1663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn066811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-32176232360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Achn066811 176 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYNGEHNHSK 232
                 9***************************************.***************85 PP
2WRKY331.2e-10363383222
                 --SS-EEEEEEE--TT-SS-E CS
        WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                  Dg++WrKYGqK+vkg+++pr
  Achn066811 363 GDGFRWRKYGQKVVKGNPYPR 383
                 59******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-29167233IPR003657WRKY domain
SuperFamilySSF1182901.14E-25173233IPR003657WRKY domain
SMARTSM007747.8E-37174232IPR003657WRKY domain
PfamPF031062.6E-25176230IPR003657WRKY domain
PROSITE profilePS5081123.663176233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-10348384IPR003657WRKY domain
SuperFamilySSF1182909.81E-9356384IPR003657WRKY domain
PROSITE profilePS5081113.586357383IPR003657WRKY domain
SMARTSM007743.9E-6362398IPR003657WRKY domain
PfamPF031061.0E-6364385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MFALERSFSE LLAGAINSSP SNNECSETAV TAIRPKTLRL KPAANLAPLG VVSQAETSGA  60
AICCPSDKVD KVSNTDSKST VVYKPLAKVV KTTFSLSPNL RNSNTSVLAP VEARVQPPNQ  120
FKYHLRTDHS SNLHQNVLAQ TEREKTNEPS KMASENIEDD QKTMPLTSNV DRPSYDGYNW  180
RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLDGQIA EIVYNGEHNH SKPQPPKRNT  240
SAGQGQGFVS GGTGQETNNP SSGNQINDIN EGFEGRVENQ NEVGGLDRST YLGKAPLSYD  300
PVAAENSCAL SEECEEGSKG LEAEDDEPKS KRRKNETESV ISGQGVQEPP VVVQSSTDSE  360
VIGDGFRWRK YGQKVVKGNP YPRFCAEYSV ATRHNHKDYN ELSHEGLNGC AEVTIDAPIS  420
SAVCESTLRE PRTIQQHSSR HMRESTITTY PPKARIQRPV NRTHRLQLQR TNHDLYHKSK  480
VGTPAHGVKS SPKDESKSVG DSPAVGSEAV KNDDGDAPVT DIQKKIRRAE RFGTSVQLSE  540
EEKRNSRAER FGTGSGSAIN GSDVLKKSEE QKRKARAERF GSLQSAPADE EAKKKARRAR  600
FAGVPKTDPL EEDKKKARAI RFSQPTSGAI SQVNGKVNDI DMKGAINGKV GGET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-181762331674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072625.10.0WRKY transcription factor 44-like
RefseqXP_028072626.10.0WRKY transcription factor 44-like
RefseqXP_028072627.10.0WRKY transcription factor 44-like
TrEMBLA0A2R6R8420.0A0A2R6R842_ACTCH; WRKY transcription factor
STRINGVIT_08s0040g03070.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-59WRKY family protein