PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn067171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family DBB
Protein Properties Length: 217aa    MW: 24151.1 Da    PI: 6.2152
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn067171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07433534
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                 C+ +e+  ++lfC  ++  lC++C ++ H
  Achn067171  4 LCDVCESAAAILFCAADEAALCRSCDDKVH 33
                7*************************9998 PP
2zf-B_box29.21.9e-095292238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Achn067171 52 DVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHE 92
                5799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.054147IPR000315B-box-type zinc finger
SMARTSM003369.9E-8147IPR000315B-box-type zinc finger
CDDcd000214.02E-5345No hitNo description
PfamPF006435.1E-6341IPR000315B-box-type zinc finger
SuperFamilySSF578452.52E-54888No hitNo description
PROSITE profilePS501199.4145196IPR000315B-box-type zinc finger
SMARTSM003362.6E-105196IPR000315B-box-type zinc finger
PfamPF006436.6E-85292IPR000315B-box-type zinc finger
CDDcd000211.51E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HERYLLMRQR VEFPGDKPSC IDELGPQPCE  120
VGQIRREQNQ LRRPTMRENQ QNHMVSAVPV LDSNIGGKIE NRMIDLNAKP QRPHGQASNN  180
QQDECEDPNN DQQCGSLDDN KYTSVGHDHG HHHHCS*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028105100.11e-104B-box zinc finger protein 18
RefseqXP_028105163.11e-104B-box zinc finger protein 18
SwissprotC0SVM55e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2R6RHJ01e-131A0A2R6RHJ0_ACTCH; B-box zinc finger protein
STRINGcassava4.1_016170m1e-101(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-78DBB family protein