PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn067341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 235aa    MW: 26880.3 Da    PI: 5.4506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn067341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-08839132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT+ Ed +lv +v+++G ++W+ Ia+  g
       Achn067341  8 KGPWTEHEDVQLVFYVNLFGDRRWDFIAKVSG 39
                     79**************************9887 PP
2Myb_DNA-binding31.63.9e-1048732248
                     T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                     ++W++Iar+++ gRt++++k++w++++
       Achn067341 48 KRWSRIARKLP-GRTDNEIKNYWRTHM 73
                     26*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.337377IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-17376IPR009057Homeodomain-like
SMARTSM007174.2E-15775IPR001005SANT/Myb domain
PfamPF002492.0E-5837IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-12874IPR009057Homeodomain-like
CDDcd001679.01E-101073No hitNo description
PfamPF002491.8E-74872IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVQEETRKGP WTEHEDVQLV FYVNLFGDRR WDFIAKVSGL KVAGDKHKRW SRIARKLPGR  60
TDNEIKNYWR THMRKKAQER KQAMSPLSSI SNNSSSASNN APVDYMPVVE TKERSFYDTG  120
GVLAPSSSIF RSYSSSNNSP MDSMPVIETK VQNFYDTGGD LEISAPKGKK DKEMEASEKV  180
YPMDDIWKDI DLSENFLTMT SPIWNYCPDL QWMMEEEESK MFPAISDPFF ALAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096805.12e-92transcription factor MYB59-like isoform X1
TrEMBLA0A2R6P7Q01e-161A0A2R6P7Q0_ACTCH; Transcription factor like
STRINGVIT_06s0004g04140.t013e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-37myb domain protein 48