PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn067421

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 228aa MW: 26540.7 Da PI: 8.5749

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn067421	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.5e-20	42	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 k+Y++Y+++ GF +r+++s+k +r++ +t+ fvC keg ++ +k +k++r+ ++ ++gC+a+l++k++k + kwevt + Achn067421 42 KYYEDYGRQNGFWIRTRTSSKGqNRSNDVTSVLFVCAKEGMYVRKAEKdgvkgndereeddkvlPKKRKRSYSTAKCGCNAQLRIKRDKwSLKWEVTFF 140 69**********99888776477888********9988888889********998899999999********************* PP FAR1 82 eleHnHela 90 + HnH+l+ Achn067421 141 DDAHNHQLV 149 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-17	42	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEESFGLYDF EVEDLQTLNN DVERLEASSS GMFFETIEEA RKYYEDYGRQ NGFWIRTRTS 60 SKGQNRSNDV TSVLFVCAKE GMYVRKAEKD GVKGNDEREE DDKVLPKKRK RSYSTAKCGC 120 NAQLRIKRDK WSLKWEVTFF DDAHNHQLVT PSKRMKMKSN RHMPKAVKDL TEAFHTENLQ 180 ISKIASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	111	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289266.1	3e-85	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024042736.1	4e-85	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5WTQ7	3e-82	M5WTQ7_PRUPE; Uncharacterized protein
STRING	EMJ10165	5e-83	(Prunus persica)
STRING	XP_004289266.1	1e-84	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-19	FAR1-related sequence 5