PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn067431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 243aa    MW: 26381.5 Da    PI: 7.4186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn067431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13190235655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Achn067431 190 SIAERIRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 235
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.913184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-15187239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-13188239No hitNo description
Gene3DG3DSA:4.10.280.109.3E-15189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10190235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEPSAVGGGG EQSRGLARFR SAPATWLEAL LESEEEDDPL KPTQLLTQLP PTSSAASTNR  60
NSAAARYTDP GLFEGGRGAA SGLGFLRHNS SPADFLAQIS SGSDGYFSNF GIPSNYDDLS  120
SPMDVSPSSK RPKELDSERR KFSSQSKGEA GGQLQGGMSS LLDAEMEKLL EDSIPCRVRA  180
KRGCATHPRS IAERIRRTRI SDRIRKLQEL VPNMDKQTNT ADMLEEAVEY VKFLQKQIKI  240
KS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059101.13e-98transcription factor bHLH80 isoform X1
RefseqXP_028059102.13e-98transcription factor bHLH80 isoform X1
SwissprotQ9C8P82e-79BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2R6RPA21e-174A0A2R6RPA2_ACTCH; Transcription factor bHLH80 like
STRINGEOY173214e-91(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-59bHLH family protein