PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn068771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 702aa    MW: 75702.6 Da    PI: 6.2961
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn068771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31295352260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g H h+k
  Achn068771 295 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHSHPK 352
                 7****************************************.***************85 PP
2WRKY103.89.6e-33494552159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Achn068771 494 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 552
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27292353IPR003657WRKY domain
SuperFamilySSF1182907.06E-25293353IPR003657WRKY domain
SMARTSM007744.9E-35294352IPR003657WRKY domain
PfamPF031062.9E-24295351IPR003657WRKY domain
PROSITE profilePS5081122.584295353IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-37479554IPR003657WRKY domain
SuperFamilySSF1182901.57E-28486554IPR003657WRKY domain
PROSITE profilePS5081138.664489554IPR003657WRKY domain
SMARTSM007741.5E-37494553IPR003657WRKY domain
PfamPF031066.2E-25495552IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MGGFDDHVAI IGDWMPPSPS PRAFFSAVWG DDISSRSIPE ASAENKNGSL FAGREEQIMS  60
SKTDEKDWAQ VDGAGNQFSK SNPFSEQKMS SRGGLLERMA ARAGFNAPKL DTESVRPGDL  120
SINPDVRSPY LTIPAGLSPT TLLESPVFLS NSLVLPSPTT GKFPFAPGGN NRSSDESKYF  180
FEDIHSSSFA FKPVAESRPS LFLGAASKIN PTLPQRAFPT IEAFVQPENS LQSQSAEPDK  240
VVSQNGGTFH LQANFSRPSG EKDVEHSPPL DEQQDDEADQ SGGGDTMVGG GAPSEDGYNW  300
RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSHEGHIT EIIYKGAHSH PKPHPNRRSV  360
IGSTNMPMDI QLDITDQTGT KMGPDGDPIC TTMHKGTADN LEVTPSIVCN GPNSHNGTHF  420
ESGDAMDGSS FSNEEDEDDQ GTHGSESLGY DGEGDESDSK RRKIEAYATE MSGATRPLRE  480
PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCTVRKH VERASHDLKS  540
VITTYEGKHN HDVPAARNSS HVNSGILSNG PAQAGGNAGG ASGSAHLHRP EPSQVHNSMG  600
SRFDRAPPAL SSFGLPGRQP LGPPHSFAFG LNQPGLANLT MSGLGHNQQL LPVHPYLGPQ  660
HLGNDMGFML PKGELKVEPL SEPLPNASIY NHIMGRLPLG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36295555878Probable WRKY transcription factor 4
2lex_A3e-36295555878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117015.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2R6PQ900.0A0A2R6PQ90_ACTCH; WRKY transcription factor
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-179WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]