PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 355aa    MW: 39830.5 Da    PI: 6.4029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.8e-51111581128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+               ++ +  e+ewyfFs++dkky+tg+r+nrat++g+Wk
  Achn069281  11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKDtqsqvlevddadkcRIGSgPENEWYFFSHKDKKYPTGTRTNRATTAGFWK 108
                 69****************************.9***************844788898888776633333566**************************** PP

         NAM  85 atgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 atg+dk+++ +      +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Achn069281 109 ATGRDKAIHLSsnstsgNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 158
                 *********987777777777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-578182IPR003441NAC domain
PROSITE profilePS5100556.5611182IPR003441NAC domain
PfamPF023659.9E-2812158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAGGNGQLC VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKDTQ  60
SQVLEVDDAD KCRIGSGPEN EWYFFSHKDK KYPTGTRTNR ATTAGFWKAT GRDKAIHLSS  120
NSTSGNSKRI GMRKTLVFYT GRAPHGQKTD WIMHEYRLDD DDDNAQLQVQ EDGWVICRVF  180
KKKTHNMGGG GGGFDIEFSQ QQHYFTDHDH HMKASGSSST PTILDEPPPK QKNQQALLQV  240
YEECNFDGGS NMHLPQLLSH ESFLSPISFN TMEMECSQNL LRLTSGAGAG CGAGHPQQQD  300
WTLLDRLLAN SHQNVHLLHT SALTQALDPV GSAQRFGLPF QYLGCETDIL KFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-47818417170NAC domain-containing protein 19
3swm_B5e-47818417170NAC domain-containing protein 19
3swm_C5e-47818417170NAC domain-containing protein 19
3swm_D5e-47818417170NAC domain-containing protein 19
3swp_A5e-47818417170NAC domain-containing protein 19
3swp_B5e-47818417170NAC domain-containing protein 19
3swp_C5e-47818417170NAC domain-containing protein 19
3swp_D5e-47818417170NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180184KKKTH
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115513.11e-148protein SOMBRERO isoform X1
RefseqXP_028115519.11e-148protein SOMBRERO isoform X1
SwissprotQ9MA171e-110SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2R6PQB00.0A0A2R6PQB0_ACTCH; Protein SOMBRERO like
STRINGEMJ146431e-143(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-101NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]