PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 263aa    MW: 28517.8 Da    PI: 4.3491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054235257223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++F +   L++H +  H
  Achn069351 235 SCNSCNRTFISDKALESHSKAkH 257
                 6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.141234262IPR007087Zinc finger, C2H2
PROSITE patternPS000280236257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MPLWVLINGE KFALGTLSVE QCRQVTFDLV FEKEFELSHD WKNGSVYFCG YSFSSTEDED  60
DFGSEDSDAD EDNVFGITEN GKIESKVEPK PVANKGKPAK PESSSKPKVT VVEPKKDESD  120
DDESEDEDES DEAMMAASDD SDSESEDDSD EDDSESEDEE TPKKAAEPSK KRPTESATKT  180
PVPAKKAKLE TPQKTDGKKG GGHTATPYPS KQAAKNPATS NKSKDQTPKS EGKVSCNSCN  240
RTFISDKALE SHSKAKHGAT AK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063559.13e-78histone deacetylase HDT1-like
TrEMBLA0A2R6PQ641e-151A0A2R6PQ64_ACTCH; Histone deacetylase
STRINGXP_010243597.11e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-17histone deacetylase 2C