PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn069471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 235aa    MW: 25255.8 Da    PI: 4.9639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn069471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-184794253
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                 y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++  
  Achn069471 47 IYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFETPEMAARAHDAAALTV 94
                69****998.**********854...6*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.06E-2246106No hitNo description
PfamPF008471.3E-124695IPR001471AP2/ERF domain
PROSITE profilePS5103222.90647104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3147105IPR001471AP2/ERF domain
SMARTSM003801.6E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2147105IPR016177DNA-binding domain
PRINTSPR003671.5E-104859IPR001471AP2/ERF domain
PRINTSPR003671.5E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSSESSSIN SDSSPSSSSG LQPKSPGPAQ TRPKRSRPES NNTKHPIYRG VRMRAWGKWV  60
SEIREPKKKS RIWLGTFETP EMAARAHDAA ALTVKGGSAV LNFPHLADLL PRPVTCLARD  120
VQAAAAKAAS MDHLGPSAAA TSSSSSSTET SEEQLSTAAT EELGEIVELP SLGSSYDSAE  180
SRSDFLFVDS VGVDVDGDGW VCYPHQWLHE DFLFFTSDHI TESAVSCDFE TSFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19451091277Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028075151.12e-74ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2R6QUZ41e-168A0A2R6QUZ4_ACTCH; Dehydration-responsive element-binding protein
STRINGXP_004291182.11e-64(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]