PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn070961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 478aa    MW: 52808.9 Da    PI: 5.8847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn070961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.7e-15282327454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksL
  Achn070961 282 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLNEAIEYLKSL 327
                 5*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-20276345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-16276332No hitNo description
PROSITE profilePS5088817.796278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-20282337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-12282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-16284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNHGVPDFQL DDEYLITRSK KSQMAEDEIM ELLWQNGQVV MQSQNQRSLK RSQIFDAVIP  60
AEQPAAREIR LEEESTTRLF MQEDEMASWL HDPMDDSSFD RDLYSDLIYP ATCAPVTPPA  120
RAAPISDVRI QPPSTTVAAA AALDPRPPIL SERRADVEYA VQLQNFVHFS RPKEEEEPGP  180
STIGNTSGTA AAMTLSSAGG GRETGMCEVT MTSSPGDSGA SFSTSAEPVK EPSPQKAADR  240
KRKGREAGDT ECASEDVEFE YPDAKKQICG STSTKRSRAV EVHNLSERRR RDRINEKMRA  300
LQELIPRCNK SDKASMLNEA IEYLKSLKLQ VQMMSMGCGM VPMTFPQQYM PQLGMGMGMG  360
MGIGMSRPLM PFPSVLAGSA MPAPATTAAH LGPRFPMPAF HMPPVPLPEP SRVQATNQSD  420
PTLNSIGSRN PNQPRMPNFP APYQQYGLHH TQVTLPRYVW TQTHQQSVNW SLNLLLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065178.10.0transcription factor PIF1-like isoform X2
TrEMBLA0A2R6P6W50.0A0A2R6P6W5_ACTCH; Transcription factor like
STRINGEOX940411e-145(Theobroma cacao)
STRINGXP_009591396.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-72phytochrome interacting factor 3-like 5