PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn071331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 562aa    MW: 62154.4 Da    PI: 6.2085
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn071331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31282339260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkg+ef+rsYYrCt+++Cp+k++ver   d+++++++Y g+H+h+k
  Achn071331 282 EDGYNWRKYGQKLVKGNEFTRSYYRCTHSNCPAKRQVERLL-DGQITDTIYLGKHEHPK 339
                 7****************************************.***************85 PP
2WRKY103.71e-32457515159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++d kvv++tYeg+H+h+
  Achn071331 457 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCPVKKHVERASHDLKVVITTYEGQHDHD 515
                 58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-26273340IPR003657WRKY domain
PROSITE profilePS5081122.332276340IPR003657WRKY domain
SuperFamilySSF1182902.09E-24280340IPR003657WRKY domain
SMARTSM007743.9E-34281339IPR003657WRKY domain
PfamPF031061.9E-24282338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-35444517IPR003657WRKY domain
SuperFamilySSF1182901.44E-28449517IPR003657WRKY domain
PROSITE profilePS5081135.634452517IPR003657WRKY domain
SMARTSM007741.5E-37457516IPR003657WRKY domain
PfamPF031066.4E-26458514IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MILDSELDEF ETQDENDEDD EKNLRATISI HYVFGICSGR VDINLFPIVP SYEIIPPIKT  60
PLRSAYSVKC NLPNEHRNTH KACVRIHRDS PDHESQSNQG GNTLSVLADG LGELQKTRSA  120
NSNFSASQCN EEGNTLSMIT EEMSDNVQVR QGSDITSREQ TVQSDENPPS VIPMRVSDNL  180
QLSQSPISII GDHSSKANQE GTSLSKIPER DSDNLQERQG SDIVLHASES IKKESSLSTL  240
SAMPEKVPDI LQLAQTPNTG SHVLQRDQEG RNSSRTPDRA SEDGYNWRKY GQKLVKGNEF  300
TRSYYRCTHS NCPAKRQVER LLDGQITDTI YLGKHEHPKP QPSPQISVCF VQPIQTKRPE  360
EPSLATGQGK SCNAHGLTSH HAKPVETPRL STIAPNDDDA EGASSLCNRT NDEVDHSGDP  420
DSKRQKKDIN NISDIAVEKP NGDPRVVVQT TSDVDIVNDG YRWRKYGQKL VKGNPNPRSY  480
YRCSNAGCPV KKHVERASHD LKVVITTYEG QHDHDKPPAR TVTHNAAGAD SNITAHNSES  540
RSRPEESRAL GLEMVVHTSA I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-35283519276WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962981e-46AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051846.10.0WRKY transcription factor 1-like isoform X1
TrEMBLA0A2R6QWH00.0A0A2R6QWH0_ACTCH; WRKY transcription factor
STRINGVIT_12s0057g00550.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.24e-83zinc-dependent activator protein-1