PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn071561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 132aa    MW: 15281.5 Da    PI: 5.044
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn071561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS141.58.6e-4415131257374
        GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                 + eal+yy+a+f+s++++lpre +erikvE+ +l+r++vnv+aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll++++ + yr+ee++
  Achn071561  15 VEEALDYYTAMFESIDVTLPRERKERIKVEQNCLARDVVNVIACEGTERVERHELLGKWKSRFTMAGFSPYPLSSLVNATIKTLLENYNCK-YRLEERD 112
                 779**************************************************************************************88.******* PP

        GRAS 356 gslvlgWkdrpLvsvSaWr 374
                 g+l+lgW++r Lv+ +aW+
  Achn071561 113 GALYLGWMNRDLVASCAWK 131
                 ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.5351112IPR005202Transcription factor GRAS
PfamPF035142.9E-4115131IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEDLEFLKMV SDKSVEEALD YYTAMFESID VTLPRERKER IKVEQNCLAR DVVNVIACEG  60
TERVERHELL GKWKSRFTMA GFSPYPLSSL VNATIKTLLE NYNCKYRLEE RDGALYLGWM  120
NRDLVASCAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1518131258375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051844.18e-72scarecrow-like transcription factor PAT1
RefseqXP_028051845.18e-72scarecrow-like transcription factor PAT1
SwissprotQ9LDL72e-65PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2R6QWF71e-77A0A2R6QWF7_ACTCH; Scarecrow-like transcription factor
STRINGPOPTR_0014s16230.11e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2134722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.28e-68GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]