PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn073021
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 175aa    MW: 19052.3 Da    PI: 4.9621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn073021genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-171058355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr ++ +grWv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  Achn073021 10 YHGVRLRS-WGRWVSEIRLPRQ---KSRIWLGSYPTAEMAARAHDVAALAIRG 58
                99***998.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.01966IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-30967IPR001471AP2/ERF domain
PfamPF008471.6E-11958IPR001471AP2/ERF domain
SMARTSM003805.6E-34972IPR001471AP2/ERF domain
PRINTSPR003671.0E-81021IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-201067IPR016177DNA-binding domain
CDDcd000181.61E-291066No hitNo description
PRINTSPR003671.0E-83248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAPTVTSRSY HGVRLRSWGR WVSEIRLPRQ KSRIWLGSYP TAEMAARAHD VAALAIRGQS  60
ATLNFPQLVH KLPYPATAAP KDIQAAAALA AAGKFDGFEI ENQAKTTSTT TSSCEGQDLG  120
RSLASESSDD VDALFDLPDL WVDSKMDSSN GLCFASWFNG IEIGFQIEEP FLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-159671473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070570.14e-55ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ73e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6RT301e-126A0A2R6RT30_ACTCH; Ethylene-responsive transcription factor
STRINGcassava4.1_021971m3e-50(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]