PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn075131

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 228aa MW: 26499.5 Da PI: 10.1975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn075131	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.9e-07	76	115	5	49
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 h ++Er RR++ +++++ L +llP+ +K +K +i+++A + Achn075131 76 HMINERMRREKQKQSYSALHSLLPPG-----TKSDKNSIVKLAAK 115 889*********************96.....57777777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.29E-5	68	122	No hit	No description
SuperFamily	SSF47459	5.5E-10	69	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.414	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-7	75	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	76	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-4	77	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEEFFLYDSP EHFFWVKEEI FPAKNRSAFE RYEDRGKGWV AKSINGSMNK RMIEFLRRNW 60 NSLARTTERR ERGYQHMINE RMRREKQKQS YSALHSLLPP GTKSDKNSIV KLAAKKVEEL 120 SAYKEKLERE NTEIEAILAA RREIKRMIEG AKIRLSVANP SSGIVSMVEV LKYLKKMGAT 180 TTSIQSKFSA QELSAVFEIG PEMEAAEVEK AVQKTLFEVE RKLHFHF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099372.1	4e-72	transcription factor bHLH92 isoform X1
Refseq	XP_028099373.1	2e-72	transcription factor bHLH92 isoform X2
TrEMBL	A0A2R6QW41	1e-163	A0A2R6QW41_ACTCH; Transcription factor bHLH92 like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	6e-39	bHLH family protein