PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn076051

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 412aa MW: 47834.5 Da PI: 9.9312

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn076051	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.2e-26	260	309	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl Achn076051 260 ARLALEDLAKYFDLPIVEASKNLKVGLTVLKKKCREFGIPRWPHRKIKSL 309 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	244	330	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-22	262	309	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MASLQAYSLK ALVVFRNFMY PELIRTVHVY KLEDEGEKEV EREYLFRSNG DYEEIGTYKV 60 LTLEKFCPSA QFEGRVNGVW LCIYLFDADR HCPPNLEDIP TILSILRNPK LVSIPSLAND 120 LQIIFQLNHR TEDGEKLQVP PKETSVGKNA GGFQIENSLP SSSLDLNSFP YPELENEESD 180 KGSGYMQMPR GLNVQVKVSL VTPYKPFKSK DNKRLFLVYY ALYNAPVLGQ EQLALLIVRK 240 NWVSGLVEKR KKRAATKDIA RLALEDLAKY FDLPIVEASK NLKVGLTVLK KKCREFGIPR 300 WPHRKIKSLD SLIRDLQHAF VHAYIFTWKQ TRQVVMKKYL QAEVEQQQKA DEAAAMVVAK 360 RQRMLESEKE SIERKPFMEI QRETKKFRQD IFKKRHRART RDNQIRTMPL F*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MASLQAYSLK ALVVFRNFMY PELIRTVHVY KLEDEGEKEV EREYLFRSNG DYEEIGTYKV  60
LTLEKFCPSA QFEGRVNGVW LCIYLFDADR HCPPNLEDIP TILSILRNPK LVSIPSLAND  120
LQIIFQLNHR TEDGEKLQVP PKETSVGKNA GGFQIENSLP SSSLDLNSFP YPELENEESD  180
KGSGYMQMPR GLNVQVKVSL VTPYKPFKSK DNKRLFLVYY ALYNAPVLGQ EQLALLIVRK  240
NWVSGLVEKR KKRAATKDIA RLALEDLAKY FDLPIVEASK NLKVGLTVLK KKCREFGIPR  300
WPHRKIKSLD SLIRDLQHAF VHAYIFTWKQ TRQVVMKKYL QAEVEQQQKA DEAAAMVVAK  360
RQRMLESEKE SIERKPFMEI QRETKKFRQD IFKKRHRART RDNQIRTMPL F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122146.1	1e-155	protein RKD5-like isoform X1
TrEMBL	A0A2R6S2X7	0.0	A0A2R6S2X7_ACTCH; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14425	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-52	RWP-RK domain-containing protein