PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn077031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 189aa    MW: 20569.9 Da    PI: 4.555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn077031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-184190255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa+a+++a+ +l+g
  Achn077031 41 TFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSLEAAAAYDHAATRLYG 90
                69****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.55E-184098No hitNo description
PROSITE profilePS5103220.6794198IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-194198IPR016177DNA-binding domain
SMARTSM003802.0E-2941104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-284198IPR001471AP2/ERF domain
PfamPF008473.4E-124290IPR001471AP2/ERF domain
PRINTSPR003673.4E-94253IPR001471AP2/ERF domain
PRINTSPR003673.4E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEEGIRKEVG KKGKRASSIS MGRSRKGCMK GKGGPENGSC TFRGVRQRTW GKWVAEIREP  60
NRGARLWLGT FNTSLEAAAA YDHAATRLYG ASANLNLQSP PPLTSTAEPA ECINSTSGGD  120
GGLGYLWEST SSGLMVIDDD DEQMISDWPD GLVESDLDWT RDIGIPMANS IDQEFMDWDG  180
LQQFPWGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-154297662ATERF1
3gcc_A2e-154297662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783903e-39KF678390.1 Morus notabilis dehydration responsive element binding transcription factor (DREB2D) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023538045.15e-46dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2R6PKE51e-135A0A2R6PKE5_ACTCH; Dehydration-responsive element-binding protein like
STRINGXP_008389032.16e-43(Malus domestica)
STRINGEMJ097177e-44(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-44ERF family protein