PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn077511

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 20565 Da PI: 10.6889

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn077511	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.7	6.1e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e+ snrqvt+skRrngilKKA+EL +LCd+++ +++fs+tgk Achn077511 9 KRLESASNRQVTYSKRRNGILKKAKELLILCDIDIILLMFSPTGK 53 6899****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-29	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.838	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-25	2	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.1E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGRVKLKIKR LESASNRQVT YSKRRNGILK KAKELLILCD IDIILLMFSP TGKPTLFLRE 60 HSNIEEVLAK IFQLTPQERA KSILVFNLRV QALKKTFKKL DHDVNIHDFL GSSCWSNAHK 120 IDNIEHLRQL EDSLRESLNR ILMEKRGENA LSILRDLDTW RSLSHQRWRN NLELL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028117483.1	2e-69	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	2e-59	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2R6PEC6	2e-82	A0A2R6PEC6_ACTCH; Agamous-like MADS-box protein
STRING	EOY21890	2e-65	(Theobroma cacao)
STRING	cassava4.1_024549m	1e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-51	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]