PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn079091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 528aa    MW: 58228.8 Da    PI: 7.4093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn079091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000444667223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ C+k Fs+   L  H+r+H
  Achn079091 46 VCSVCNKGFSSGKALGGHMRVH 67
                6*******************99 PP
2zf-C2H211.20.0012106125221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 +C+ Cgk F++  +L  H+r
  Achn079091 106 TCTLCGKDFPSMKSLFGHMR 125
                 6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-74467No hitNo description
Gene3DG3DSA:3.30.160.604.6E-44467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1594572IPR007087Zinc finger, C2H2
PfamPF139121.1E-84567IPR007087Zinc finger, C2H2
SMARTSM003550.0724567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576674.29E-7100127No hitNo description
PROSITE profilePS501579.598105132IPR007087Zinc finger, C2H2
SMARTSM003550.031105127IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-7107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
PfamPF139123.3E-5371394IPR007087Zinc finger, C2H2
SuperFamilySSF576672.82E-6371394No hitNo description
PROSITE profilePS5015711.24372399IPR007087Zinc finger, C2H2
SMARTSM003550.54372394IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280374394IPR007087Zinc finger, C2H2
SuperFamilySSF576672.82E-6437464No hitNo description
PROSITE profilePS501579.058442464IPR007087Zinc finger, C2H2
PfamPF139127.9E-10442465IPR007087Zinc finger, C2H2
SMARTSM003551.3442464IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280444464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDQDPGDHQS DGKLWIKMKI PKIEEEGING EDRIGSGPRK NDEPRVCSVC NKGFSSGKAL  60
GGHMRVHVQQ AHIKDEKPPK KSKTTTNYHH GNASESLRSP RIDKPTCTLC GKDFPSMKSL  120
FGHMRCHPER EWRGIQPPSH TKTKDSSSSS SVSGVDRNSN QRIDSCGVDT GAQVMDLSGC  180
LSGWAMRDRR GRGAVADGSV TDEEEKEEAA KLRAAVHDLM SLARGSSLDS GLTDKDRIEE  240
YQATNSYSLT EKNEIEAKNW VFESKHRTIE VGYRRDCPVK KVKIDESAKN LETEKIPEKW  300
VFGDIPTDDE LVGISDGTVP SEELIKNYKC ESNTSTRLVM MKSKKKRKKL KLRDLESAPV  360
VAEEPPPPLD RYKCSTCNRC FSTHQALGGH RSYHNKAKSS HTVVESSSGA HGEESEANVI  420
ARADEIKDNE GSSSSKQIES MHRCKICRKT FLTGQALGGH KRCHWVSPAE APSSQTTSPG  480
ETSQTDRKIL GFDLNEVPSM EDEDGVESYQ VGGYGYGFNS SHNSSIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344348KKRKK
2346352RKKLKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052337.11e-144uncharacterized protein LOC114256854
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.18e-19C2H2 family protein