PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn079441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 741aa    MW: 80059.3 Da    PI: 5.9882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn079441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32312369260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +D ynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y g Hnh+k
  Achn079441 312 EDVYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYDGAHNHPK 369
                 7****************************************.***************85 PP
2WRKY103.98.7e-33528586159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Achn079441 528 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 586
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-28306370IPR003657WRKY domain
SuperFamilySSF1182909.02E-25309370IPR003657WRKY domain
SMARTSM007745.6E-35311369IPR003657WRKY domain
PfamPF031064.9E-24312368IPR003657WRKY domain
PROSITE profilePS5081123.146312370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-37513588IPR003657WRKY domain
SuperFamilySSF1182901.57E-28520588IPR003657WRKY domain
PROSITE profilePS5081138.48523588IPR003657WRKY domain
SMARTSM007741.2E-37528587IPR003657WRKY domain
PfamPF031066.7E-25529586IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MGGFDDHVAI IGDWVPPSPR SFFSALGDEI SSRSITELSI ENKNRSLFSG PQEKIISGRN  60
DENDGPRAGD QPAESNAFSE QKMNSRGGLL ERMAARAGFN APRLNTESIR PADLSLNPDV  120
RSPYLTIPPG LSPTTLLESP VFLSNSLVLP SPTTGKFPFS LSGNGKNSTL AEEAPGKSTE  180
NFFEDADTSS FAFKPVAASG PSLSLGPTGK MTPPNLPRQN FTGIEFSVQP ENSLKSQNVE  240
HSKVQYQDGT ALHLHQDFSR KDTAGNTIMS ESRAVGNGGG SGEHLSPHDD QQDEEADQRG  300
IGDTMVGGAS SEDVYNWRKY GQKQVKGSEY PRSYYKCTHP NCPVKKKVER SHEGHITEII  360
YDGAHNHPKP PPNRRSGSGP LYLSTDMQVD GADQPGAQIV AVGDPIWTTV QKGTAGGPLD  420
WRNENLEVTS SASVGAEYSN APNSLRGQNG THVEPGDEVD GSSTFSNEED EDDRATHGSI  480
SLGYDGEGDE SESKRRKIEA YATEMSGASR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK  540
VVKGNPNPRS YYKCTSAGCT VRKHVERASH DLKSVITTYE GKHNHDIPAA RNSSHVNSGT  600
PNNGPAQSVG AAAVRTHLPR PEPSQFHNSM ARFDGHPVLS SLGFPGRQQL EPPPWFNFGM  660
NQTSLANLEM AGLGPNQGKL PVLPVYPYLG QQRLASEMGF VLPKGEPKVE PLSEPPLNLP  720
NGSSVYQQIT SRLPPLGPQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36312589878Probable WRKY transcription factor 4
2lex_A2e-36312589878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117015.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2R6P5940.0A0A2R6P594_ACTCH; WRKY transcription factor
STRINGXP_008246415.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]