PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn080611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 195aa    MW: 22073.3 Da    PI: 9.3439
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn080611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-203993256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk+ ++tkeq + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  Achn080611 39 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSK 93
                78889************************************************98 PP
2HD-ZIP_I/II1171.1e-3739127189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr+y +l+e+n+rL++eveeLr+
   Achn080611  39 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLKARQVEVWFQNRRARSKLKQTEMECEYLKRWYGSLTEQNRRLQREVEELRA 127
                  69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-202496IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-192689IPR009057Homeodomain-like
PROSITE profilePS5007117.2483595IPR001356Homeobox domain
SMARTSM003892.2E-173799IPR001356Homeobox domain
CDDcd000864.36E-163896No hitNo description
PfamPF000463.5E-173993IPR001356Homeobox domain
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PfamPF021832.0E-1095129IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-2195138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKDLDINQVP AGAGEEDWTA VSMELDDEDP INMNSGPPRK KLRLTKEQSR LLEESFRQNH  60
TLNPKQKEAL AMQLKLKARQ VEVWFQNRRA RSKLKQTEME CEYLKRWYGS LTEQNRRLQR  120
EVEELRAMKV GPPTVISPHT CEPLLASTLT ICPRCERITA NQDKGPTRAA TAANPTTLSS  180
KVPTIHPRLP SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057408.11e-103homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX17e-79HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH387e-79HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2R6PGS11e-140A0A2R6PGS1_ACTCH; Homeobox-leucine zipper protein
STRINGGLYMA20G01770.12e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-67homeobox-leucine zipper protein 17