PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn081091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 749aa    MW: 83243 Da    PI: 6.6714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn081091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-2059114156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q++eLe++F++n++p+++er eL k+l+L+ +qVk+WFqNrR+++k
  Achn081091  59 RKKYHRHTPYQIQELEAYFKMNNHPDEKERLELGKRLSLESKQVKFWFQNRRTQMK 114
                 7999*************************************************998 PP
2START27.28.3e-10284361169
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                 ela++a++elvk+a+ ++p+W +s     e +n++e++++ ++  +     + +ea ra+g+v+ +  +lve+lld +
  Achn081091 284 ELALRAMDELVKLAQIDDPLWIRSLdggrEVLNEEEYMKICPPCIGmkptgFVTEATRATGMVISNNLNLVETLLDAM 361
                 5899************************9**************99999***************************987 PP
3START104.61.7e-3336148494206
                 EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE..........EEEEEEE-EE--SSXXHHHH CS
       START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh..........skvtwvehvdlkgrlphwll 181
                 m  ++qal+plvp R + f+R+++q+++ +w++vdvS+d  ++ +  + +v + +lpSg+++e+++ng           s+vtwveh+++++++ h l+
  Achn081091 361 MHVAFQALTPLVPvRHVKFLRFCKQHTESVWAVVDVSIDGIREISDAHTLVNCWRLPSGCIVEDMANGFskkstnsnskSQVTWVEHTEYDESVAHHLY 459
                 66799***************************************99***************************************************** PP

                 HHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 182 rslvksglaegaktwvatlqrqcek 206
                 r+l++sg+ +ga++w+a+lqrqc++
  Achn081091 460 RPLLSSGMGFGAQKWLAALQRQCKC 484
                 ***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-2134114IPR009057Homeodomain-like
SuperFamilySSF466897.27E-2047114IPR009057Homeodomain-like
PROSITE profilePS5007117.18456116IPR001356Homeobox domain
SMARTSM003895.5E-1458120IPR001356Homeobox domain
CDDcd000864.95E-1859114No hitNo description
PfamPF000463.8E-1859114IPR001356Homeobox domain
PROSITE profilePS5084825.118275487IPR002913START domain
SuperFamilySSF559619.34E-21276484No hitNo description
CDDcd088757.85E-84279482No hitNo description
SMARTSM002345.5E-18284484IPR002913START domain
PfamPF018527.2E-28361484IPR002913START domain
SuperFamilySSF559611.12E-14531742No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MHKNIIFYGR HVNITSLMEK GILMARIEED GNESRSENDR LEGASGDDQD TTGNKHTRRK  60
KYHRHTPYQI QELEAYFKMN NHPDEKERLE LGKRLSLESK QVKFWFQNRR TQMKCYLLVL  120
SYGTELVYLN QTQTERHENN YLKRQNEELL IENIRMKVAM GNPICCNCGG PAILGEVSIE  180
KHHLRVENAR LKEELNHISV LANRFLGRPI SSFSGSVHPP MLSNTSVELA VGINGFSGLS  240
SVDTTFPIGL DSKDRILNTL PVVPPTTTGI SHNDIPFEKS IFLELALRAM DELVKLAQID  300
DPLWIRSLDG GREVLNEEEY MKICPPCIGM KPTGFVTEAT RATGMVISNN LNLVETLLDA  360
MHVAFQALTP LVPVRHVKFL RFCKQHTESV WAVVDVSIDG IREISDAHTL VNCWRLPSGC  420
IVEDMANGFS KKSTNSNSKS QVTWVEHTEY DESVAHHLYR PLLSSGMGFG AQKWLAALQR  480
QCKCLAVLMS STISTEDHSG ITPTGRTSMV RLANRMTRSY CAGVCATMHM WQLVQVGNMG  540
EEARLMIRNS VDKPGEPSGL VLSATTSVWM PVSHQRLFDF LRDEQLRSEW DELSHGGPMQ  600
EMVHIAPGQD YGNCVSLLRT TAANNTNQNA MLILQETQSD ALGSLIVYTA VDIAAMQVVM  660
NGGDSASVVL LPSGFAIVPD SFPNSARPND CNGDLIKGNN GGSLLTLGFQ ILVDNQPPSA  720
KLTTESVDTV NSLIARTIQR IKAALHCN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028088472.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2R6PM520.0A0A2R6PM52_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]