PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn081661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 153aa MW: 17085.4 Da PI: 6.0812

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn081661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.9	2e-30	6	93	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk +lp+++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ Achn081661 6 PCASCKLLRRRCVKDCIFAPYFPSDDPQKFAMVHK------------ELPDHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 92 7******************************96............99*********************************************998 PP DUF260 100 e 100 e Achn081661 93 E 93 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.228	5	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-29	6	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCVKD CIFAPYFPSD DPQKFAMVHK ELPDHQRADA VSSLVYEANA 60 RVRDPVYGCV GAISYLQNQV SQLQMQLAVA QAEILCIQMQ QEPALPTTPQ LVDHPDDKSF 120 FLPHQYLNFT SSSSSVMQEY SLKRESLIAD WS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	2	107	7	124	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	2	107	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022743766.1	1e-82	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-61	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2R6PLL9	1e-106	A0A2R6PLL9_ACTCH; LOB domain-containing protein
STRING	XP_006486261.1	4e-79	(Citrus sinensis)
STRING	XP_006435806.1	4e-79	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-64	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]