PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn082601

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 401aa MW: 42009.6 Da PI: 8.9441

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn082601	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.3e-12	14	38	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Achn082601 14 QPVCQYYMRTGMCKFGASCKYHHPR 38 689********************96 PP
2	zf-CCCH	35.6	1.6e-11	59	84	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Achn082601 59 GEKECSYYVKTGQCKFGVTCKFHHPQ 84 7899********************97 PP
3	zf-CCCH	37.6	3.8e-12	231	257	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p Achn082601 231 PGQPECHYYMKTGDCKFGSSCRYHHPP 257 5789*********************97 PP
4	zf-CCCH	29.6	1.2e-09	279	303	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a +G Ck+G++CkF H++ Achn082601 279 APLCTHYAYNGVCKFGPSCKFDHPM 303 68*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	11	39	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-7	11	38	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	14	38	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-9	14	38	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-5	16	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	57	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-5	57	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-9	59	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.54E-6	60	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	63	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-6	230	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.305	230	258	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-9	232	257	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.03E-5	234	257	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-4	236	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	276	304	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-5	276	303	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.11E-5	279	304	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-7	279	303	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	281	301	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MRAGGGEFPE RVGQPVCQYY MRTGMCKFGA SCKYHHPRQG GGSAIPVVLN ISGYPLRPGE 60 KECSYYVKTG QCKFGVTCKF HHPQPAGIQV PAPLAGPLPI PAPASAIYPS MHSPAPSSQQ 120 YRVVAGNWPV TRPALIPGSY LQGAYSPVLL PPGMVPFSGW NPYQLSTHLV QTPVSSVASP 180 STQSTVGSAP IYGLTQLSPS APVYPGAYFP LPDSAGPSSS SQKEHAFPER PGQPECHYYM 240 KTGDCKFGSS CRYHHPPEWS APKMNFALSL MNLPLRPGAP LCTHYAYNGV CKFGPSCKFD 300 HPMGMLSYSP SASSLADMPV APYLVGSSMG TLAPSSSSSD LRPELSIRMS SSMSTSSGSV 360 GSIFSRSGPA SHPSQQSGQA SSPSTAGSST SHGGGVHTSS *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MRAGGGEFPE RVGQPVCQYY MRTGMCKFGA SCKYHHPRQG GGSAIPVVLN ISGYPLRPGE  60
KECSYYVKTG QCKFGVTCKF HHPQPAGIQV PAPLAGPLPI PAPASAIYPS MHSPAPSSQQ  120
YRVVAGNWPV TRPALIPGSY LQGAYSPVLL PPGMVPFSGW NPYQLSTHLV QTPVSSVASP  180
STQSTVGSAP IYGLTQLSPS APVYPGAYFP LPDSAGPSSS SQKEHAFPER PGQPECHYYM  240
KTGDCKFGSS CRYHHPPEWS APKMNFALSL MNLPLRPGAP LCTHYAYNGV CKFGPSCKFD  300
HPMGMLSYSP SASSLADMPV APYLVGSSMG TLAPSSSSSD LRPELSIRMS SSMSTSSGSV  360
GSIFSRSGPA SHPSQQSGQA SSPSTAGSST SHGGGVHTSS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028102409.1	0.0	zinc finger CCCH domain-containing protein 34-like isoform X1
Swissprot	Q5NAW2	1e-123	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A2R6PJX8	0.0	A0A2R6PJX8_ACTCH; Zinc finger CCCH domain-containing protein
STRING	PGSC0003DMT400058323	1e-175	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2412	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-114	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]