PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn084581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 421aa    MW: 46945.6 Da    PI: 8.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn084581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14216267155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+eY+k+L+
  Achn084581 216 QRLTHIVVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEYVKELE 267
                 699***************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-12214271No hitNo description
SuperFamilySSF474594.19E-17214286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14214270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504215266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11216267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11221272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVNSLFYHEI GLKRFLPACI RVYSTRYLFG NLDGTGSFIC YILSDLIQQS LVCFTMDKTQ  60
NHAVSDQLRN QLTSIEHQEL QSSTIENQSK NRTLIEYNRT LIAHNRNNRA PVKKLSINRH  120
QSRFKVALST NELFNFIIDD TFSATPHTAA IPPETTTLKS RDLGCGGGSD SGSSIARPAG  180
TEPAGGGGQR SAAAQGRKKL RRRAKVCKNQ EEAETQRLTH IVVERNRRKQ MNEHLAVLRS  240
LMPESYVQRG DQASIVGGAI EYVKELEHLL QSLEAQKLLF LQQGGQPPLP TTTAATTIGF  300
LTTPFAQFFA YPQYTWSQLP NKYTSKSKEA MADIEVTMID THANLRILSR KNLKQLSKLV  360
TEFHTLCLTI LHLNVTTLDP LVLYSISAKV EEGCQLTSAD EIAGAVHHML RIIEEEATLC  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202RKKLRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057886.11e-138transcription factor bHLH71
SwissprotQ9C7T43e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2R6PCZ40.0A0A2R6PCZ4_ACTCH; Transcription factor bHLH71 like
STRINGcassava4.1_012613m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]