PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn086361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24265.4 Da    PI: 9.4477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn086361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-193588356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+ ++++eql+ Le+ F+ + +++ e++ +LA++lgL+ rqV +WFqNrR+++k
  Achn086361 35 KKKRLSSEQLDSLESSFQDEINLDPERKLRLARELGLQPRQVAIWFQNRRTRWK 88
                67789************************************************9 PP
2HD-ZIP_I/II109.81.9e-3535117284
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  kk+rls+eq+ +LE+sF+ e +L+perK +lareLglqprqva+WFqnrR R+k+k+lE+ y+ Lk+++da+++e+++L++e 
   Achn086361  35 KKKRLSSEQLDSLESSFQDEINLDPERKLRLARELGLQPRQVAIWFQNRRTRWKAKHLEQLYDGLKHEFDAVSREKQKLQEEE 117
                  9*****************999**********************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
SuperFamilySSF466892.99E-192290IPR009057Homeodomain-like
PROSITE profilePS5007117.9123090IPR001356Homeobox domain
SMARTSM003897.2E-183294IPR001356Homeobox domain
CDDcd000868.79E-163391No hitNo description
PfamPF000469.9E-173488IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-203797IPR009057Homeodomain-like
PRINTSPR000312.0E-56170IPR000047Helix-turn-helix motif
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PRINTSPR000312.0E-57086IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKYPMLAGQA AHVAVGGGCG VGKSMMMRYN NQKDKKKRLS SEQLDSLESS FQDEINLDPE  60
RKLRLARELG LQPRQVAIWF QNRRTRWKAK HLEQLYDGLK HEFDAVSREK QKLQEEEFVY  120
DHKKVVALRA MIKDQAMKNQ VSTEISGEDT VESTSVGNRG SGKPPGATLS HDRYHHHQMP  180
DKSNNNTFFN VVDDYNSAMP PPYWGTILPS YP*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079863.11e-68putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR05e-43ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2R6RY161e-133A0A2R6RY16_ACTCH; Homeobox-leucine zipper protein like
STRINGGorai.002G244200.14e-60(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-39homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]