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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn086661 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 170aa MW: 18964.8 Da PI: 6.5145 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 49.3 | 1.3e-15 | 95 | 166 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekk 70
+W++ + L++a+ ++ ++l+rg+l++ +Weev++ + ++ ++s +qCk+k +nl+kryk +++++++
Achn086661 95 EWSDAAIASLLDAYLDKFTQLNRGNLRGRDWEEVASSVseTCEKKTKSVEQCKNKVDNLKKRYKLERHRMNN 166
5*************************************554556678*****************99998765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 3.7E-17 | 93 | 167 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 170 aa Download sequence Send to blast |
MASCDDDFSL LADENAPPPN PNIAQHHHVA AFAHRLQPPP STADPIPFDD ESDPNKSSDK 60 RKDRDELSDG GTPYSHKRSK LSVSSGGESR KDREEWSDAA IASLLDAYLD KFTQLNRGNL 120 RGRDWEEVAS SVSETCEKKT KSVEQCKNKV DNLKKRYKLE RHRMNNSGV* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028058714.1 | 9e-75 | uncharacterized protein LOC114262547 | ||||
| TrEMBL | A0A2R6RY13 | 1e-119 | A0A2R6RY13_ACTCH; Uridylate kinase | ||||
| STRING | XP_009802965.1 | 8e-62 | (Nicotiana sylvestris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G10030.2 | 3e-57 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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